PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G2326
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 182aa    MW: 20604.3 Da    PI: 8.7621
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G2326genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY178.24.8e-5541592170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                  +++s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG C++l svnla + q +a ++         ++ +  ++e  ++   +++ +++  ++++
  Gh_D01G2326   4 SHNSAPEQLCYIPCNLCNIILAVNVPCNSLFETVTVRCGQCSNLCSVNLAASFQSRAGKDV--------QVPNYTSSEYRIDLGSSSRCKNKLPKRAT 93 
                  68899**********************************************9999999885........33344444444433333332222223333 PP

        YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  ++++ ++e       v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl
  Gh_D01G2326  94 TINTTTQER-----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 159
                  333333333.....469****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-628159IPR006780YABBY protein
SuperFamilySSF470951.44E-698152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSSHNSAPE QLCYIPCNLC NIILAVNVPC NSLFETVTVR CGQCSNLCSV NLAASFQSRA  60
GKDVQVPNYT SSEYRIDLGS SSRCKNKLPK RATTINTTTQ ERVVNRPPDK RHRAPSLYNQ  120
FIKEEIQRIK LNNPDITHRE AFSTAAKNWA RFPHIHFGLM LETDNQPKLN DDSTEPFHQL  180
LK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.216590.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5267816e-37HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455973.11e-135PREDICTED: axial regulator YABBY 5-like isoform X1
RefseqXP_012455982.11e-135PREDICTED: axial regulator YABBY 5-like isoform X1
RefseqXP_012455990.11e-135PREDICTED: axial regulator YABBY 5-like isoform X1
SwissprotQ8GW461e-78YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0D2Q5K01e-135A0A0D2Q5K0_G
STRINGVIT_11s0016g05590.t017e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-80YABBY family protein